Index
A
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B
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C
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D
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E
|
F
|
G
|
H
|
I
|
J
|
K
|
L
|
M
|
O
|
P
|
R
|
S
|
T
|
U
|
V
|
W
|
X
|
Z
A
aboveDiagFlat() (in module coniii.mean_field_ising)
adj (in module coniii.utils)
adj_sym (in module coniii.utils)
analyticEntropy() (in module coniii.mean_field_ising)
avgE() (in module coniii.mean_field_ising)
avgmHomogeneous() (in module coniii.mean_field_ising)
avgxHomogeneous() (in module coniii.mean_field_ising)
B
base_repr (in module coniii.utils)
basic_setup() (coniii.solvers.Solver method)
bin_states() (in module coniii.utils)
bracket1d() (coniii.solvers.RegularizedMeanField method)
build_cluster() (coniii.samplers.WolffIsing method)
burn_and_exchange() (coniii.samplers.ParallelTempering method)
burn_in_replicas() (coniii.samplers.ParallelTempering method)
C
calc_de() (in module coniii.utils)
calc_e (in module coniii.samplers)
calc_overlap() (in module coniii.utils)
check_e_logp() (in module coniii.samplers)
ClusterExpansion (class in coniii.solvers)
clusterID() (coniii.solvers.ClusterExpansion method)
coarse_grain() (in module coniii.ising.automaton)
coarse_grain_with_func() (in module coniii.utils)
compare_samplers() (in module coniii.test_samplers)
cond_hess() (coniii.solvers.Pseudo method)
cond_jac() (coniii.solvers.Pseudo method)
cond_log_likelihood() (coniii.solvers.Pseudo method)
conditionalHessian() (in module coniii.pseudo_inverse_ising)
conditionalJacobian() (in module coniii.pseudo_inverse_ising)
conditionalLogLikelihood() (in module coniii.pseudo_inverse_ising)
coniii (module)
coniii.enumerate (module)
coniii.enumerate_potts (module)
coniii.ising (module)
coniii.ising.automaton (module)
coniii.mean_field_ising (module)
coniii.pseudo_inverse_ising (module)
coniii.samplers (module)
coniii.solvers (module)
coniii.test_samplers (module)
coniii.test_solvers (module)
coniii.test_utils (module)
coniii.utils (module)
convert_corr() (in module coniii.utils)
convert_params() (in module coniii.utils)
coocCluster() (in module coniii.mean_field_ising)
cooccurrence_matrix() (in module coniii.mean_field_ising)
coocExpectations() (in module coniii.mean_field_ising)
coocMatBayesianMean() (in module coniii.mean_field_ising)
coocSampleCovariance() (in module coniii.mean_field_ising)
coocStdevsFlat() (in module coniii.mean_field_ising)
cross (in module coniii.samplers)
cross_ (in module coniii.samplers)
D
define_ising_helper_functions() (in module coniii.utils)
define_ising_helper_functions_sym() (in module coniii.utils)
define_potts_helper_functions() (in module coniii.utils)
define_pseudo_ising_helper_functions() (in module coniii.utils)
define_pseudo_potts_helper_functions() (in module coniii.utils)
define_ternary_helper_functions() (in module coniii.utils)
define_triplet_helper_functions() (in module coniii.utils)
deltaS() (coniii.solvers.ClusterExpansion method)
dFdT() (in module coniii.mean_field_ising)
diagFlatIndex() (in module coniii.mean_field_ising)
dmdT() (in module coniii.mean_field_ising)
E
energy_terms_generator() (coniii.enumerate_potts.PythonFileWriterBase method)
(coniii.enumerate_potts.SpecificFieldGenericCouplings method)
Enumerate (class in coniii.solvers)
equilibrate_samples() (coniii.samplers.Heisenberg3DSampler method)
estimate_jac() (coniii.solvers.MCH method)
F
fast_logsumexp() (in module coniii.enumerate)
FHomogeneous() (in module coniii.mean_field_ising)
fightPossibilities() (in module coniii.mean_field_ising)
fill_in() (coniii.solvers.Solver method)
find_neighbors() (coniii.samplers.WolffIsing method)
findJmatrixAnalytic_CoocMat() (in module coniii.mean_field_ising)
flip_metropolis (coniii.ising.automaton.Ising2D attribute)
fourthOrderCoocMat() (in module coniii.mean_field_ising)
G
generate_cond_samples() (coniii.samplers.Metropolis method)
generate_sample() (coniii.samplers.SWIsing method)
(coniii.samplers.WolffIsing method)
generate_sample_parallel() (coniii.samplers.SWIsing method)
(coniii.samplers.WolffIsing method)
generate_samples() (coniii.samplers.HamiltonianMC method)
(coniii.samplers.Heisenberg3DSampler method)
(coniii.samplers.ParallelTempering method)
(coniii.samplers.Sampler method)
(coniii.solvers.MCHIncompleteData method)
generate_samples_boost() (coniii.samplers.Metropolis method)
generate_samples_parallel() (coniii.samplers.Sampler method)
generate_samples_parallel_boost() (coniii.samplers.Metropolis method)
(coniii.samplers.Potts3 method)
generate_samples_parallel_py() (coniii.samplers.Metropolis method)
generate_samples_py() (coniii.samplers.Metropolis method)
get_3idx() (in module coniii.enumerate)
get_clusters() (coniii.samplers.SWIsing method)
get_nidx() (in module coniii.enumerate)
get_terms() (in module coniii.enumerate)
get_terms01() (in module coniii.enumerate)
get_terms11() (in module coniii.enumerate)
grad_e (in module coniii.samplers)
grad_E() (coniii.samplers.Heisenberg3DSampler method)
grad_e_theta (in module coniii.samplers)
H
HamiltonianMC (class in coniii.samplers)
Heisenberg3DSampler (class in coniii.samplers)
I
ind_to_sub (in module coniii.utils)
independentEntropyHomogeneous() (in module coniii.mean_field_ising)
independentEntropyHomogeneous2() (in module coniii.mean_field_ising)
initialize_beta() (coniii.samplers.ParallelTempering static method)
insert_newlines() (in module coniii.enumerate_potts)
Ising2D (class in coniii.ising.automaton)
ising_convert_params() (in module coniii.utils)
isingDeltaCooc() (in module coniii.mean_field_ising)
iter_cluster() (in module coniii.samplers)
iterate() (coniii.ising.automaton.Ising2D method)
iterate_beta() (coniii.samplers.ParallelTempering static method)
iterate_neighbors (in module coniii.samplers)
J
JfullFromCluster() (in module coniii.mean_field_ising)
jit_sample (in module coniii.samplers)
jit_sample_nearby_vector (in module coniii.samplers)
JmeanField() (in module coniii.mean_field_ising)
K
K() (coniii.solvers.MPF method)
k_corr() (in module coniii.utils)
L
learn_parameters_mch() (coniii.solvers.MCH method)
(coniii.solvers.MCHIncompleteData method)
(coniii.solvers.SparseMCH method)
list_adjacent_states() (coniii.solvers.MPF method)
logCosh() (in module coniii.mean_field_ising)
logK() (coniii.solvers.MPF method)
M
m() (in module coniii.mean_field_ising)
mat2vec() (in module coniii.utils)
MCH (class in coniii.solvers)
MCHIncompleteData (class in coniii.solvers)
meanFieldStability() (in module coniii.mean_field_ising)
Metropolis (class in coniii.samplers)
MonteCarloHistogram (in module coniii.solvers)
mp_fast_logsumexp() (in module coniii.enumerate)
MPF (class in coniii.solvers)
multiInfoHomogeneous() (in module coniii.mean_field_ising)
multinomial() (in module coniii.utils)
O
one_step() (coniii.samplers.SWIsing method)
(coniii.samplers.WolffIsing method)
optimize_beta() (coniii.samplers.ParallelTempering method)
P
pair_cooc_mat() (coniii.solvers.Pseudo method)
pair_corr() (in module coniii.utils)
pairCoocMat() (in module coniii.pseudo_inverse_ising)
pairwise() (in module coniii.enumerate)
pairwise_prod (in module coniii.samplers)
ParallelTempering (class in coniii.samplers)
Potts3 (class in coniii.samplers)
print_cluster_size() (coniii.samplers.SWIsing method)
Pseudo (class in coniii.solvers)
pseudo_log_likelihood() (coniii.solvers.Pseudo method)
pseudoInverseIsing() (in module coniii.pseudo_inverse_ising)
pseudoLogLikelihood() (in module coniii.pseudo_inverse_ising)
PythonFileWriterBase (class in coniii.enumerate_potts)
R
random_sample() (coniii.samplers.Metropolis method)
(coniii.samplers.Potts3 method)
randomly_flip_clusters() (coniii.samplers.SWIsing method)
RegularizedMeanField (class in coniii.solvers)
replace_diag() (in module coniii.utils)
replaceDiag() (in module coniii.mean_field_ising)
S
S() (coniii.solvers.ClusterExpansion method)
sample() (coniii.samplers.HamiltonianMC method)
sample_bonds (in module coniii.samplers)
sample_energy_min() (coniii.samplers.Heisenberg3DSampler method)
sample_ising() (in module coniii.samplers)
sample_metropolis() (coniii.samplers.Heisenberg3DSampler method)
(coniii.samplers.Metropolis method)
(coniii.samplers.Potts3 method)
(coniii.samplers.Sampler method)
sample_nearby_sample() (coniii.samplers.Heisenberg3DSampler method)
sample_nearby_vector() (coniii.samplers.Heisenberg3DSampler method)
Sampler (class in coniii.samplers)
seedGenerator() (in module coniii.mean_field_ising)
set_insertion_ix() (coniii.solvers.Solver method)
setup_replicas() (coniii.samplers.ParallelTempering method)
SHomogeneous() (in module coniii.mean_field_ising)
Sindependent() (coniii.solvers.ClusterExpansion method)
SmeanField() (in module coniii.mean_field_ising)
solve() (coniii.solvers.ClusterExpansion method)
(coniii.solvers.Enumerate method)
(coniii.solvers.MCH method)
(coniii.solvers.MCHIncompleteData method)
(coniii.solvers.MPF method)
(coniii.solvers.Pseudo method)
(coniii.solvers.RegularizedMeanField method)
(coniii.solvers.Solver method)
(coniii.solvers.SparseEnumerate method)
(coniii.solvers.SparseMCH method)
Solver (class in coniii.solvers)
SparseEnumerate (class in coniii.solvers)
SparseMCH (class in coniii.solvers)
spec_cluster() (in module coniii.samplers)
SpecificFieldGenericCouplings (class in coniii.enumerate_potts)
specificHeat() (in module coniii.mean_field_ising)
split_concat_params() (in module coniii.utils)
split_string() (in module coniii.enumerate_potts)
state_probs() (in module coniii.utils)
sub_to_ind (in module coniii.utils)
subsets() (coniii.solvers.ClusterExpansion method)
susc() (in module coniii.mean_field_ising)
SWIsing (class in coniii.samplers)
symmetrizeUsingUpper() (in module coniii.mean_field_ising)
T
test_adj() (in module coniii.test_utils)
test_base_repr() (in module coniii.test_utils)
test_calc_de() (in module coniii.test_utils)
test_convert_corr() (in module coniii.test_utils)
test_convert_params() (in module coniii.test_utils)
test_define_ising_helper_functions() (in module coniii.test_utils)
test_Enumerate() (in module coniii.test_solvers)
test_init() (in module coniii.test_solvers)
test_Metropolis() (in module coniii.test_samplers)
test_MPF() (in module coniii.test_solvers)
test_pair_corr() (in module coniii.test_utils)
test_ParallelTempering() (in module coniii.test_samplers)
test_pickling() (in module coniii.test_solvers)
test_Potts3() (in module coniii.test_samplers)
test_Pseudo() (in module coniii.test_solvers)
test_sample_ising() (in module coniii.test_samplers)
test_SparseEnumerate() (in module coniii.test_solvers)
test_state_gen_and_count() (in module coniii.test_utils)
test_sub_to_ind() (in module coniii.test_utils)
test_vec2mat() (in module coniii.test_utils)
testDerivatives() (in module coniii.pseudo_inverse_ising)
to_dict() (coniii.samplers.Heisenberg3DSampler class method)
triplet() (in module coniii.enumerate)
U
unflatten() (in module coniii.mean_field_ising)
unique_rows() (in module coniii.utils)
unravel_index() (in module coniii.utils)
unsummedLogZ() (in module coniii.mean_field_ising)
unsummedZ() (in module coniii.mean_field_ising)
unwrap_self_worker_obj() (in module coniii.solvers)
update_parameters() (coniii.samplers.Metropolis method)
(coniii.samplers.Sampler method)
(coniii.samplers.WolffIsing method)
update_replica_parameters() (coniii.samplers.ParallelTempering method)
V
vec2mat() (in module coniii.utils)
W
WolffIsing (class in coniii.samplers)
worker_objective_task() (coniii.solvers.MPF static method)
write() (coniii.enumerate_potts.PythonFileWriterBase method)
write_eqns() (in module coniii.enumerate)
write_py() (in module coniii.enumerate)
X
xbin_states() (in module coniii.utils)
xpotts_states (in module coniii.utils)
Z
zero_diag() (in module coniii.utils)
zeroDiag() (in module coniii.mean_field_ising)
ConIII
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Contents:
coniii.enumerate module
coniii.enumerate_potts module
coniii.ising package
coniii.solvers module
coniii.samplers module
coniii.utils module
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